Welcome to OCDO. Your question might attract better and more knowledgeable attention in the Wisconsin sub-forum. PM moderator Grapeshot.
Your predicament makes no sense to this non-professional.
Here is the link to the Wisconsin State statutes http://docs.legis.wisconsin.gov/statutes/prefaces/toc
The concealed carry requirements are in Chapter 175 Miscellaneous Police Provisions
Subsection 175.60(9g) has the requirements for NOT issuing a CWL
Are there details in the explanation letter? But I think that you should be OK OC based on what you have written. I see no reason not to re-start the clock on the appeal process by again applying.